Next: Samenvatting
Up: From Pattern Formation to Morphogenesis
Previous: 7. Summarising Discussion
  Contents
-
Akam, M.
- The molecular basis for metameric pattern in the Drosophila
embryo.
Development 101: 1-22 (1987).
MEDLINE.
-
Alcantara, F. & Monk, M.
- Signal propagation during aggregation in the slime mould Dictyostelium discoideum.
J. Gen. Microbiol. 85: 321-334 (1974).
MEDLINE.
-
Allessie, M. A., Bonke, F. I. M. & Schopman, F. G. J.
- Circus movement in rabbit atrial muscle as a mechanism of
trachycardia.
Circ. Res. 33: 54-62 (1973).
MEDLINE.
-
Alon, U., Surette, M. G., Barkai, N. & Leibler, S.
- Robustness in bacterial chemotaxis.
Nature 397: 168-171 (1999).
MEDLINE.
-
Amagai, A., Ishida, S. & Takeuchi, I.
- Cell differentiation in a temperature-sensitive stalkless mutant of
Dictyostelium discoideum.
J. Embryol. Exp. Morphol. 74: 235-243 (1983).
MEDLINE.
-
Bär, M. & Eiswirth, M.
- Turbulence due to spiral breakup in a continuous excitable medium.
Phys. Rev. E 48: R1635-R1637 (1993).
-
Barkai, N. & Leibler, S.
- Robustness in simple biochemical networks.
Nature 387: 913-917 (1997).
MEDLINE.
-
Barkley, D. S.
- Adenosine-3',5'-phosphate: identification as acrasin in a species of
cellular slime mold.
Science 165: 1133-1134 (1969).
MEDLINE.
-
Berks, M. & Kay, R. R.
- Combinatorial control of cell differentiation by cAMP and DIF-1
during development of Dictyostelium discoideum.
Development 110: 977-984 (1990).
MEDLINE.
-
Boerlijst, M. & Hogeweg, P.
- Self-structuring and selection: spiral waves as a substrate for
prebiotic evolution.
In Artificial life II, edited by C. G. Langton, C. Taylor,
J. D. Farmer & S. Rasmussen, volume 10 of SFI studies in the
sciences of complexity, pp. 255-276. Addison-Wesley, Redwood City,
California (1991).
-
Bonner, J. T.
- Evidence for the formation of aggregates by chemotaxis in the
development of the slime mold Dictyostelium discoideum.
J. Exp. Zool. 106: 1-26 (1947).
-
Bonner, J. T.
- The demonstration of acrasin in the later stages of the development
of the slime mold Dictyostelium discoideum.
J. Exp. Zool. 110: 259-271 (1949).
-
Bonner, J. T.
- Proteolysis and orientation in Dictyostelium slugs.
J. Gen. Microbiol. 139: 2319-2322 (1993).
MEDLINE.
-
Bonner, J. T.
- A way of following individual cells in the migrating slugs of Dictyostelium discoideum.
Proc. Natl. Acad. Sci. U.S.A. 95: 9355-9359 (1998).
MEDLINE.
-
Bonner, J. T., Chiang, A., Lee, J. & Suthers, H. B.
- The possible role of ammonia in phototaxis of migrating slugs of
Dictyostelium discoideum.
Proc. Natl. Acad. Sci. U.S.A. 85: 3885-3887 (1988).
-
Bonner, J. T., Compton, K. B., Cox, E. C., Fey, P. & Gregg, K. Y.
- Development in one dimension: the rapid differentiation of Dictyostelium discoideum in glass capillaries.
Proc. Natl. Acad. Sci. U.S.A. 92: 8249-8253 (1995).
MEDLINE.
-
Bonner, J. T. & Dodd, M. R.
- Evidence for gas-induced orientation in the cellular slime molds.
Dev. Biol. 5: 344-361 (1962).
-
Bonner, J. T., Har, D. & Suthers, H. B.
- Ammonia and thermotaxis: further evidence for a central role of
ammonia in the directed cell mass movements of Dictyostelium discoideum.
Proc. Natl. Acad. Sci. U.S.A. 86: 2733-2736 (1989).
-
Bonner, J. T., Hay, A., John, D. G. & Suthers, H. B.
- pH affects fruiting and slug orientation in Dictyostelium
discoideum.
J. Embryol. Exp. Morphol. 87: 207-213 (1985).
MEDLINE.
-
Bonner, J. T., Koontz, Jr, P. G. & Paton, D.
- Size in relation to the rate of migration in the slime mold Dictyostelium discoideum.
Mycologia 45: 235-240 (1953).
-
Bonner, J. T., Suthers, H. B. & Odell, G. M.
- Ammonia orients cell masses and speeds up aggregating cells of slime
moulds.
Nature 323: 630-632 (1986).
-
Bonner, J. T. & Whitfield, F. E.
- The relation of sorocarp size to phototaxis in the cellular slime
mold, Dictyostelium purpureum.
Biol. Bull. 128: 51-57 (1965).
-
Bozzaro, S. & Ponte, E.
- Cell adhesion in the life cycle of Dictyostelium.
Experientia 51: 1175-1188 (1995).
MEDLINE.
-
Bresenham, J. E.
- Algorithm for computer control of a digital plotter.
IBM Systems J. 4: 25-30 (1965).
-
Bretschneider, T., Siegert, F. & Weijer, C. J.
- Three-dimensional scroll waves of cAMP could direct cell movement
and gene expression in Dictyostelium slugs.
Proc. Natl. Acad. Sci. U.S.A. 92: 4387-4391 (1995).
MEDLINE.
-
Bretschneider, T., Vasiev, B. & Weijer, C. J.
- A model for cell movement during Dictyostelium mound
formation.
J. theor. Biol. 189: 41-51 (1997).
MEDLINE.
-
Bretschneider, T., Vasiev, B. & Weijer, C. J.
- A model for Dictyostelium slug movement.
J. theor. Biol. 199: 125-136 (1999).
MEDLINE.
-
Buder, J.
- Neue phototropische Fundamentalversuche.
Ber. Dtsch. Bot. Ges. 38: 10-19 (1920).
-
Budrene, E. O. & Berg, H. C.
- Complex patterns formed by motile cells of Escherichia coli.
Nature 349: 630-633 (1991).
MEDLINE.
-
Budrene, E. O. & Berg, H. C.
- Dynamics of formation of symmetrical patterns by chemotactic
bacteria.
Nature 376: 49-53 (1995).
MEDLINE.
-
Castets, V., Dulos, E., Boissonade, J. & de Kepper, P.
- Experimental evidence of a sustained standing Turing-type
nonequilibrium chemical pattern.
Phys. Rev. Lett. 64: 2953-2956 (1990).
MEDLINE.
-
Chaplain, M. A. J., Singh, G. D. & McLachlan, J. C. (editors).
- On Growth and Form: Spatio-temporal Pattern Formation in
Biology.
Wiley series in mathematical and computational biology. John Wiley
& Sons, Chichester (1999).
-
Chen, T.-L. L., Kowalczyk, P. A., Ho, G. & Chisholm, R. L.
- Targeted disruption of the Dictyostelium myosin essential
light chain gene produces cells defective in cytokinesis and morphogenesis.
J. Cell Sci. 108: 3207-3218 (1995).
MEDLINE.
-
Chen, T.-L. L., Wolf, W. A. & Chisholm, R. L.
- Cell-type-specific rescue of myosin function during Dictyostelium development defines two distinct cell movements required for
culmination.
Development 125: 3895-3903 (1998).
MEDLINE.
-
Clow, P. A., Chen, T.-L. L., Chisholm, R. L. & McNally, J. G.
- Three-dimensional in vivo analysis of Dictyostelium mounds
reveals directional sorting of prestalk cells and defines a role for the
myosin II regulatory light chain in prestalk cell sorting and tip
protrusion.
Development 127: 2715-2728 (2000).
MEDLINE.
-
Cohen, M. H. & Robertson, A.
- Chemotaxis and the early stages of aggregation in cellular slime
molds.
J. theor. Biol. 31: 119-130 (1971a).
MEDLINE.
-
Cohen, M. H. & Robertson, A.
- Wave propagation in the early stages of aggregation of cellular slime
molds.
J. theor. Biol. 31: 101-118 (1971b).
MEDLINE.
-
Conway Morris, S.
- The Cambrian ``explosion'': slow-fuse or megatonnage?
Proc. Natl. Acad. Sci. U.S.A. 97: 4426-4429 (2000).
MEDLINE.
-
Cotter, D. A., Sands, T. W., Virdy, K. J., North, M. J., Klein, G. &
Satre, M.
- Patterning of development in Dictyostelium discoideum:
factors regulating growth, differentiation, spore dormancy, and germination.
Biochem. Cell Biol. 70: 892-919 (1992).
MEDLINE.
-
Courtemanche, M., Glass, L. & Keener, J. P.
- Instabilities of a propagating pulse in a ring of excitable media.
Phys. Rev. Lett. 70: 2182-2185 (1993).
MEDLINE.
-
Courtemanche, M. & Winfree, A. T.
- Re-entrant rotating waves in a Beeler-Reuter based model of
two-dimensional cardiac electrical activity.
Int. J. Bifurc. Chaos 1: 431-444 (1991).
-
Dallon, J. C. & Othmer, H. G.
- A continuum analysis of the chemotactic signal seen by Dictyostelium discoideum.
J. theor. Biol. 194: 461-483 (1998).
MEDLINE.
-
Darcy, P. K. & Fisher, P. R.
- Pharmacological evidence for a role for cyclic AMP signalling in
Dictyostelium discoideum slug behaviour.
J. Cell Sci. 96: 661-667 (1990).
-
von Dassow, G., Meir, E., Munro, E. M. & Odell, G. M.
- The segment polarity network is a robust developmental module.
Nature 406: 188-192 (2000).
MEDLINE.
-
Davies, L., Satre, M., Martin, J.-B. & Gross, J. D.
- The target of ammonia action in Dictyostelium.
Cell 75: 321-327 (1993).
MEDLINE.
-
Dormann, D., Siegert, F. & Weijer, C. J.
- Analysis of cell movement during the culmination phase of Dictyostelium development.
Development 122: 761-769 (1996).
MEDLINE.
-
Dormann, D., Vasiev, B. & Weijer, C. J.
- Propagating waves control Dictyostelium discoideum
morphogenesis.
Biophys. Chem. 72: 21-35 (1998).
MEDLINE.
-
van Duijn, B. & Inouye, K.
- Regulation of movement speed by intracellular pH during Dictyostelium discoideum chemotaxis.
Proc. Natl. Acad. Sci. U.S.A. 88: 4951-4955 (1991).
-
Dunbar, A. J. & Wheldrake, J. F.
- Analysis of mRNA levels for developmentally regulated prespore
specific glutamine synthetase in Dictyostelium discoideum.
Dev. Growth Differ. 39: 617-624 (1997).
MEDLINE.
-
Durston, A. J.
- Dictyostelium discoideum aggregation fields as excitable
media.
J. theor. Biol. 42: 483-504 (1973).
MEDLINE.
-
Durston, A. J., Cohen, M. H., Drage, D. J., Potel, M. J., Robertson, A.
& Wonio, D.
- Periodic movements of Dictyostelium discoideum
sorocarps.
Dev. Biol. 52: 173-180 (1976).
-
Dusenbery, D. B.
- Avoided temterature leads to the surface: computer modeling of slime
mold and nematode thermotaxis.
Behav. Ecol. Sociobiol. 22: 219-223 (1988).
-
Dworkin, M. & Keller, K. H.
- Solubility and diffusion coefficient of adenosine
3':5'-monophosphate.
J. Biol. Chem. 252: 864-865 (1977).
MEDLINE.
-
Feit, I. N. & Sollitto, R. B.
- Ammonia is the gas used for the spacing of fruiting bodies in the
cellular slime mold, Dictyostelium discoideum.
Differentiation 33: 193-196 (1987).
-
Fisher, P. R.
- The role of gaseous metabolites in phototaxis by Dictyostelium discoideum slugs.
FEMS Microbiol. Lett. 77: 117-120 (1991).
-
Fisher, P. R.
- Genetics of phototaxis in a model eukaryote, Dictyostelium
discoideum.
Bioessays 19: 397-407 (1997).
MEDLINE.
-
Fisher, P. R., Häder, D.-P. & Williams, K. L.
- Multidirectional phototaxis by Dictyostelium discoideum
amoebae.
FEMS Microbiol. Lett. 29: 43-47 (1985).
-
Fisher, P. R. & Williams, K. L.
- Bidirectional phototaxis by Dictyostelium discoideum
slugs.
FEMS Microbiol. Lett. 12: 87-89 (1981).
-
FitzHugh, R.
- Thresholds and plateaus in the Hodgkin-Huxley nerve equations.
J. Gen. Physiol. 43: 867-896 (1960).
-
FitzHugh, R.
- Impulses and physiological states in theoretical models of nerve
membrane.
Biophys. J. 1: 445-466 (1961).
-
Foerster, P., Müller, S. C. & Hess, B.
- Curvature and spiral geometry in aggregation patterns of Dictyostelium discoideum.
Development 109: 11-16 (1990).
-
Fontana, D. R.
- Dictyostelium discoideum cohesion and adhesion.
In Principles of cell adhesion, edited by P. D. Richardson &
M. Steiner, pp. 63-86. CRC Press, Boca Raton (1995).
-
Francis, D. W.
- Some studies on phototaxis of Dictyostelium.
J. Cell. Comp. Physiol. 64: 131-138 (1964).
-
Gerhardt, M., Schuster, H. & Tyson, J. J.
- A cellular automation model of excitable media including curvature
and dispersion.
Science 247: 1563-1566 (1990).
MEDLINE.
-
Ginger, R. S., Drury, L., Baader, C., Zhukovskaya, N. V. & Williams,
J. G.
- A novel Dictyostelium cell surface protein important for both
cell adhesion and cell sorting.
Development 125: 3343-3352 (1998).
MEDLINE.
-
Glazier, J. A., Anderson, M. P. & Grest, G. S.
- Coarsening in the 2-dimensional soap froth and the large
Q-Potts-model - a detailed comparison.
Phil. Mag. B 62: 615-645 (1990).
-
Glazier, J. A. & Graner, F.
- Simulation of the differential adhesion driven rearrangement of
biological cells.
Phys. Rev. E 47: 2128-2154 (1993).
-
Graner, F.
- Can surface adhesion drive cell-rearrangement? Part I:
Biological cell-sorting.
J. theor. Biol. 164: 455-476 (1993).
-
Graner, F. & Glazier, J. A.
- Simulation of biological cell sorting using a two-dimensional
extended Potts model.
Phys. Rev. Lett. 69: 2013-2016 (1992).
MEDLINE.
-
Graner, F. & Sawada, Y.
- Can surface adhesion drive cell rearrangement? Part II: A
geometrical model.
J. theor. Biol. 164: 477-506 (1993).
-
Grimson, M. J., Haigler, C. H. & Blanton, R. L.
- Cellulose microfibrils, cell motility, and plasma membrane protein
organization change in parallel during culmination in Dictyostelium
discoideum.
J. Cell Sci. 109: 3079-3087 (1996).
MEDLINE.
-
Grindrod, P.
- Plane waves.
In The theory and applications of reaction-diffusion equations:
patterns and waves, Oxford applied mathematics and computing science series,
pp. 114-156. Clarendon Press, Oxford, 2nd edition (1996).
-
Häder, D.-P. & Burkart, U.
- Optical properties of Dictyostelium discoideum
pseudoplasmodia responsible for phototactic orientation.
Exp. Mycol. 7: 1-8 (1983).
-
Hagberg, A. & Meron, E.
- From labyrinthine patterns to spiral turbulence.
Phys. Rev. Lett. 72: 2494-2497 (1994).
MEDLINE.
-
Harwood, A. J., Hopper, N. A., Simon, M.-N., Driscoll, D. M., Veron, M.
& Williams, J. G.
- Culmination in Dictyostelium is regulated by the
cAMP-dependent protein kinase.
Cell 69: 615-624 (1992).
MEDLINE.
-
Haser, H. & Häder, D.-P.
- Orientation and phototaxis in pseudoplasmodia of an axenic strain of
the cellular slime mold, Dictyostelium discoideum.
Exp. Mycol. 16: 119-131 (1992).
-
Higuchi, G. & Yamada, T.
- A cinematographical study of cellular slime molds. I. Stalk and
disk formation in Dictyostelium discoideum.
Cytologia 49: 841-849 (1984).
-
Hodgkin, A. L. & Huxley, A. F.
- A quantitative description of membrane current and its application to
conduction and excitation in nerve.
J. Physiol. 117: 500-544 (1952).
-
Höfer, T., Sherratt, J. A. & Maini, P. K.
- Cellular pattern formation during Dictyostelium aggregation.
Physica D 85: 425-444 (1995a).
-
Höfer, T., Sherratt, J. A. & Maini, P. K.
- Dictyostelium discoideum: cellular self-organization in
an excitable biological medium.
Proc. R. Soc. Lond. Ser. B 259: 249-257 (1995b).
MEDLINE.
-
Hogeweg, P.
- On searching generic properties of non generic phenomena: an approach
to bioinformatic theory formation.
In Artificial Life VI: Proceedings of the Sixth International
Conference on Artificial Life, edited by C. Adami, R. K. Belew, H. Kitano &
C. E. Taylor, pp. 285-294. MIT Press, Cambridge, MA (1998).
-
Hogeweg, P.
- Evolving mechanisms of morphogenesis: on the interplay between
differential adhesion and cell differentiation.
J. theor. Biol. 203: 317-333 (2000a).
MEDLINE.
-
Hogeweg, P.
- Shapes in the shadow: evolutionary dynamics of morphogenesis.
Artif. Life 6: 85-101 (2000b).
MEDLINE.
-
Horváth, D., Petrov, V., Scott, S. K. & Showalter, K.
- Instabilities in propagating reaction-diffusion fronts.
J. Chem. Phys. 98: 6332-6343 (1993).
-
Inouye, K. & Takeuchi, I.
- Analytical studies on migrating movement of the pseudoplasmodium of
Dictyostelium discoideum.
Protoplasma 99: 289-304 (1979).
-
Ising, E.
- Beitrag zur Theorie des Ferromagnetismus.
Zeitschr. f. Physik 31: 235-258 (1925).
-
Ito, H. & Glass, L.
- Spiral breakup in a new model of discrete excitable media.
Phys. Rev. Lett. 66: 671-674 (1991).
MEDLINE.
-
Jahnke, W., Henze, C. & Winfree, A. T.
- Chemical vortex dynamics in three-dimensional excitable media.
Nature 336: 662-665 (1988).
-
Jermyn, K., Traynor, D. & Williams, J.
- The initiation of basal disc formation in Dictyostelium discoideum is an early event in culmination.
Development 122: 753-760 (1996).
MEDLINE.
-
Jermyn, K. A. & Williams, J. G.
- An analysis of culmination in Dictyostelium using prestalk
and stalk- specific cell autonomous markers.
Development 111: 779-787 (1991).
MEDLINE.
-
Jiang, Y., Levine, H. & Glazier, J.
- Possible cooperation of differential adhesion and chemotaxis in mound
formation of Dictyostelium.
Biophys. J. 75: 2615-2625 (1998).
MEDLINE.
-
Karma, A.
- Spiral breakup in model equations of action potential propagation in
cardiac tissue.
Phys. Rev. Lett. 71: 1103-1106 (1993).
MEDLINE.
-
Karma, A.
- Electrical alternans and spiral wave breakup in cardiac tissue.
Chaos 4: 461-472 (1994).
-
Kauffman, S. A.
- Pattern formation in the Drosophila embryo.
Phil. Trans. R. Soc. Lond. Ser. B 295: 567-594 (1981).
MEDLINE.
-
Kauffman, S. A., Shymko, R. M. & Trabert, K.
- Control of sequential compartment formation in Drosophila.
Science 199: 259-270 (1978).
MEDLINE.
-
Kawasaki, K., Mochizuki, A., Matsushita, M., Umeda, T. & Shigesada,
N.
- Modeling spatio-temporal patterns generated by Bacillus subtilis.
J. theor. Biol. 188: 177-185 (1997).
MEDLINE.
-
Kawasaki, Y., Kiryu, T., Usui, K. & Mizutani, H.
- Growth of the cellular slime mold, Dictyostelium discoideum, is gravity dependent.
Plant Physiol. 93: 1568-1572 (1990).
-
Kay, R. R.
- DIF signalling.
In Dictyostelium: a model system for cell and
developmental biology, edited by Y. Maeda, K. Inouye & I. Takeuchi, pp.
279-292. Universal Academy Press, Tokyo (1997).
-
Keener, J. P.
- An eikonal-curvature equation for action potential propagation in
myocardium.
J. Math. Biol. 29: 629-651 (1991).
MEDLINE.
-
Keller, E. F. & Segel, L. A.
- Initiation of slime mold aggregation viewed as an instability.
J. theor. Biol. 26: 399-415 (1970).
MEDLINE.
-
Kellerman, K. A. & McNally, J. G.
- Mound-cell movement and morphogenesis in Dictyostelium.
Dev. Biol. 208: 416-429 (1999).
MEDLINE.
-
Kerszberg, M. & Wolpert, L.
- Mechanisms for positional signalling by morphogen transport: a
theoretical study.
J. theor. Biol. 191: 103-114 (1998).
MEDLINE.
-
Kessin, R. H.
- The evolution of the cellular slime molds.
In Dictyostelium: a model system for cell and
developmental biology, edited by Y. Maeda, K. Inouye & I. Takeuchi, pp.
3-13. Universal Academy Press, Tokyo (1997).
-
Kessin, R. H., Gundersen, G. G., Zaydfudim, V., Grimson, M. & Blanton,
R. L.
- How cellular slime molds evade nematodes.
Proc. Natl. Acad. Sci. U.S.A. 93: 4857-4861 (1996).
MEDLINE.
-
Kessler, D. A. & Levine, H.
- Stability of traveling waves in the Belousov-Zhabotinskii reaction.
Phys. Rev. A 41: 5418-5430 (1990).
-
Kitami, M.
- Chemotactic response of Dictyostelium discoideum cell
to c-AMP at the culmination stage.
Cytologia 49: 257-264 (1984).
-
Kitami, M.
- Motive force of the culminating mass of cells in the developing
fruiting body of Dictyostelium discoideum.
Cytologia 50: 109-115 (1985).
-
Kosugi, T. & Inouye, K.
- Negative chemotaxis to ammonia and other weak bases by migrating
slugs of the cellular slime moulds.
J. Gen. Microbiol. 135: 1589-1598 (1989).
-
Kuramoto, Y.
- Instability and turbulence of wavefronts in reaction-diffusion
systems.
Prog. Theor. Phys. 63: 1885-1903 (1980).
-
Lauzeral, J., Halloy, J. & Goldbeter, A.
- Desynchronization of cells on the developmental path triggers the
formation of spiral waves of cAMP during Dictyostelium aggregation.
Proc. Natl. Acad. Sci. U.S.A. 94: 9153-9158 (1997).
MEDLINE.
-
Lechleiter, J., Girard, S., Peralta, E. & Clapham, D.
- Spiral calcium wave propagation and annihilation in Xenopus
laevis oocytes.
Science 252: 123-126 (1991).
MEDLINE.
-
Levine, H., Aranson, I., Tsimring, L. & Truong, T. V.
- Positive genetic feedback governs cAMP spiral wave formation in
Dictyostelium.
Proc. Natl. Acad. Sci. U.S.A. 93: 6382-6386 (1996).
MEDLINE.
-
Levine, H. & Reynolds, W.
- Streaming instability of aggregating slime mold amoebae.
Phys. Rev. Lett. 66: 2400-2403 (1991).
MEDLINE.
-
Levine, H., Tsimring, L. & Kessler, D.
- Computational modeling of mound development in Dictyostelium.
Physica D 106: 375-388 (1997).
-
Loomis, W. F.
- The Dictyostelium genome sequencing project [online]
<dicty.cmb.nwu.edu/dicty/genomeseq.htm>
(2000).
-
Ludwig, D., Aronson, D. G. & Weinberger, H. F.
- Spatial patterning of the spruce budworm.
J. Math. Biol. . 8: 217-258 (1979).
-
MacKay, S. A.
- Computer simulation of aggregation in Dictyostelium discoideum.
J. Cell Sci. 33: 1-16 (1978).
MEDLINE.
-
MacWilliams, H. K.
- Transplantation experiments and pattern mutants in cellular slime
mold slugs.
In Developmental order: its origin and regulation, edited by
S. S. Subtelny & P. B. Green, pp. 463-483. A. R. Liss, New York (1982).
-
Maeda, M.
- Functional analysis [online]
<www.csm.biol.tsukuba.ac.jp/function.html>
(2000).
-
Maeda, Y., Inouye, K. & Takeuchi, I. (editors).
- Dictyostelium: a model system for cell and developmental
biology.
Number 21 in Frontiers science series. Universal Academy Press, Tokyo
(1997).
-
Marée, A. F. M., Keulen, W., Boucher, C. A. B. & de Boer, R. J.
- Estimating relative fitness in viral competition experiments.
accepted for publication in J. Virol.
-
Markus, M., Kloss, G. & Kusch, I.
- Disordered waves in a homogeneous, motionless excitable medium.
Nature 371: 402-404 (1994).
-
Markus, M. & Stavridis, K.
- Observation of chemical turbulence in the Belousov-Zhabotinsky
reaction.
Int. J. Bifurc. Chaos 4: 1233-1243 (1994a).
-
Markus, M. & Stavridis, K.
- Wavefront deformations in excitable media: chemical lenses and
ripples.
Phil. Trans. R. Soc. Lond. Ser. A 347: 601-609
(1994b).
-
Martiel, J.-L. & Goldbeter, A.
- A model based on receptor desensitization for cyclic AMP signaling
in Dictyostelium cells.
Biophys. J. 52: 807-828 (1987).
-
Matsuyama, T., Takagi, Y., Nakagawa, Y., Itoh, H., Wakita, J. &
Matsushita, M.
- Dynamic aspects of the structured cell population in a swarming
colony of Proteus mirabilis.
J. Bacteriol. 182: 385-393 (2000).
MEDLINE.
-
Maynard Smith, J. & Szathmáry, E.
- The Major Transitions in Evolution.
W. H. Freeman Spektrum, Oxford (1995).
-
Meinhardt, H.
- A model for the prestalk/prespore patterning in the slug of the slime
mold Dictyostelium discoideum.
Differentiation 24: 191-202 (1983).
MEDLINE.
-
Miura, K. & Siegert, F.
- Light affects cAMP signaling and cell movement activity in Dictyostelium discoideum.
Proc. Natl. Acad. Sci. U.S.A. 97: 2111-2116 (2000).
MEDLINE.
-
Mostow, G. D. (editor).
- Mathematical models for cell rearrangement.
Yale University Press, London (1975).
-
Müller, V., Marée, A. F. M. & de Boer, R. J.
- Release of virus from lymphoid tissue affects HIV-1 and HCV
kinetics in the blood.
submitted.
-
Müller, V., Marée, A. F. M. & de Boer, R. J.
- Small variations in multiple parameters account for wide variations
in HIV-1 set points: a novel modeling approach.
submitted.
-
Murray, J. D.
- Mathematical Biology, volume 19 of Biomathematics.
Springer-Verlag, Berlin, 2nd edition (1993).
-
Murray, J. D. & Swanson, K. R.
- On the mechanochemical theory of biological pattern formation with
applications to wound healing and angiogenesis.
In On Growth and Form: Spatio-temporal Pattern Formation in
Biology, edited by M. A. J. Chaplain, G. D. Singh & J. C. McLachlan, Wiley
series in mathematical and computational biology, pp. 251-285. John Wiley
& Sons, Chichester (1999).
-
Nagumo, J. S., Arimoto, S. & Yoshizawa, S.
- An active pulse transmission line simulating nerve axon.
Proc. IRE 50: 2061-2071 (1962).
-
Nagy-Ungvarai, Zs. & Müller, S. C.
- Characterization of wave front instabilities in the
Belousov-Zhabotinsky reaction: an overview.
Int. J. Bifurc. Chaos 4: 1257-1264 (1994).
-
Nanjundiah, V.
- Chemotaxis, signal relaying and aggregation morphology.
J. theor. Biol. 42: 63-105 (1973).
MEDLINE.
-
Nanjundiah, V.
- Models for pattern formation in the dictyostelid slime molds.
In Dictyostelium: a model system for cell and
developmental biology, edited by Y. Maeda, K. Inouye & I. Takeuchi, pp.
305-322. Universal Academy Press, Tokyo (1997).
-
Newell, P. C. & Gross, J. D.
- Restriction enzyme mediated integration in Dictyostelium
discoideum [online]
<www.bioch.ox.ac.uk/~pcnlab/remi.html>
(2000).
-
Nusslein-Volhard, C.
- Determination of the embryonic axes of Drosophila.
Development Suppl: 1-10 (1991).
MEDLINE.
-
O'Day, D.
- Macrocyst world: the sexual cycle of Dictyostelium and other
CSM species [online]
<www.erin.utoronto.ca/~w3oday/MACWORLD4.html>
(2000).
-
Odell, G. M. & Bonner, J. T.
- How the Dictyostelium discoideum grex crawls.
Phil. Trans. R. Soc. Lond. Ser. B 312: 487-525 (1986).
-
Ohta, T., Mimura, M. & Kobayashi, R.
- Higher-dimensional localized patterns in excitable media.
Physica D 34: 115-144 (1989).
-
van Oss, C., Panfilov, A. V., Hogeweg, P., Siegert, F. & Weijer,
C. J.
- Spatial pattern formation during aggregation of the slime mould Dictyostelium discoideum.
J. theor. Biol. 181: 203-213 (1996).
MEDLINE.
-
Othmer, H. G. & Schaap, P.
- Oscillatory cAMP signaling in the development of Dictyostelium discoideum.
Comments Theor. Biol. 5: 175-282 (1998).
-
Ouyang, Q. & Flesselles, J.-M.
- Transition from spirals to defect turbulence driven by a convective
instability.
Nature 379: 143-146 (1996).
-
Palková, Z., Janderová, B., Gabriel, J., Zikánová, B.,
Pospíšek, M. & Forstová, J.
- Ammonia mediates communication between yeast colonies.
Nature 390: 532-536 (1997).
MEDLINE.
-
Pálsson, E. & Cox, E. C.
- Origin and evolution of circular waves and spirals in Dictyostelium discoideum territories.
Proc. Natl. Acad. Sci. U.S.A. 93: 1151-1155 (1996).
MEDLINE.
-
Panfilov, A. V.
- Three dimensional vortices in active media.
In Nonlinear wave processes in excitable media, edited by
A. V. Holden, M. Markus & H. G. Othmer, volume 244 of NATO ASI
series B: physics, pp. 361-381. Plenum Press, New York (1991).
-
Panfilov, A. V. & Hogeweg, P.
- Spiral breakup in a modified FitzHugh-Nagumo model.
Phys. Lett. A 176: 295-299 (1993).
-
Panfilov, A. V. & Hogeweg, P.
- Mechanisms of cardiac fibrillation.
Science 270: 1223-1224 (1995), and response by A. T. Winfree,
ibid. 270: 1224-1225 (1995).
MEDLINE.
-
Panfilov, A. V. & Hogeweg, P.
- Scroll breakup in a three-dimensional excitable medium.
Phys. Rev. E 53: 1740-1743 (1996).
-
Panfilov, A. V. & Holden, A. V.
- Self-generation of turbulent vortices in a two-dimensional model of
cardiac tissue.
Phys. Lett. A 151: 23-26 (1990).
-
Panfilov, A. V. & Holden, A. V. (editors).
- Computational biology of the heart.
John Wiley & Sons, Chichester (1997).
-
Panfilov, A. V. & Pertsov, A. M.
- Vortex ring in a three-dimensional active medium described by
reaction-diffusion equations.
Dokl. Akad. Nauk SSSR 274: 1500-1503 (1984).
MEDLINE.
-
Parnas, H. & Segel, L. A.
- Computer evidence concerning the chemotactic signal in Dictyostelium discoideum.
J. Cell Sci. 25: 191-204 (1977).
MEDLINE.
-
Parnas, H. & Segel, L. A.
- A computer simulation of pulsatile aggregation in Dictyostelium discoideum.
J. theor. Biol. 71: 185-207 (1978).
MEDLINE.
-
Poff, K. L., Fontana, D. R., Häder, D.-P. & Schneider, M. J.
- An optical model for phototactic orientation in Dictyostelium
discoideum slugs.
Plant Cell Physiol. 27: 533-539 (1986).
-
Potts, R. B.
- Some generalized order-disorder transformations.
Proc. Camb. Phil. Soc. 48: 106-109 (1952).
-
Raper, K. B.
- Pseudoplasmodium formation and organization in Dictyostelium
discoideum.
J. Elisha Mitchell Sci. Soc. 56: 241-282 (1940).
-
Rubinow, S. I., Segel, L. A. & Ebel, W.
- A mathematical framework for the study of morphogenetic development
in the slime mold.
J. theor. Biol. 91: 99-113 (1981).
-
Savill, N. J. & Hogeweg, P.
- Modeling morphogenesis: from single cells to crawling slugs.
J. theor. Biol. 184: 229-235 (1997).
-
Savill, N. J. & Hogeweg, P.
- Competition and dispersal in predator-prey waves.
Theor. Popul. Biol. 56: 243-263 (1999).
MEDLINE.
-
Schaap, P., Tang, Y. & Othmer, H. G.
- A model for pattern formation in Dictyostelium discoideum.
Differentiation 60: 1-16 (1996).
-
Schindler, J. & Sussman, M.
- Inhibition by ammonia of intracellular cAMP accumulation in Dictyostelium discoideum: its significance for the regulation of
morphogenesis.
Dev. Genet. 1: 13-20 (1979).
-
Segel, L. A., Goldbeter, A., Devreotes, P. N. & Knox, B. E.
- A mechanism for exact sensory adaptation based on receptor
modification.
J. theor. Biol. 120: 151-179 (1986).
MEDLINE.
-
Sekimura, T. & Kobuchi, Y.
- A spatial pattern formation model for Dictyostelium discoideum.
J. theor. Biol. 122: 325-338 (1986).
-
Shibata, M. & Bures, J.
- Reverberation of cortical spreading depression along closed-loop
pathways in rat cerebral cortex.
J. Neurophysiol. 35: 381-388 (1972).
MEDLINE.
-
Siegert, F. & Weijer, C.
- Digital image processing of optical density wave propagation in Dictyostelium discoideum and analysis of the effects of caffeine and
ammonia.
J. Cell Sci. 93: 325-335 (1989).
-
Siegert, F. & Weijer, C. J.
- Analysis of optical density wave propagation and cell movement in the
cellular slime mould Dictyostelium discoideum.
Physica D 49: 224-232 (1991).
-
Siegert, F. & Weijer, C. J.
- Three-dimensional scroll waves organize Dictyostelium slugs.
Proc. Natl. Acad. Sci. U.S.A. 89: 6433-6437 (1992).
MEDLINE.
-
Smith, D.
- Completed and near-complete 80 REMI genes [online]
<glamdring.ucsd.edu/others/dsmith/REMIgenes2000.html>
(2000).
-
Smith, E., Fisher, P. R., Grant, W. N. & Williams, K. L.
- Sensory behaviour in Dictyostelium discoideum slugs:
phototaxis and thermotaxis are not mediated by a change in slug speed.
J. Cell Sci. 54: 329-339 (1982).
-
Smith, E. & Williams, K. L.
- Preparation of slime sheath from Dictyostelium discoideum.
FEMS Microbiol. Lett. 6: 119-122 (1979).
-
Stavroudis, O. N.
- Ray tracing.
In The optics of rays, wavefronts, and caustics, volume 38 of
Pure and applied physics, pp. 81-103. Academic Press, New York
(1972).
-
Steinberg, M.
- Reconstruction of tissues by dissociated cells.
Science 141: 401-408 (1963).
-
Steinbock, O., Siegert, F., Müller, S. C. & Weijer, C. J.
- Three-dimensional waves of excitation during Dictyostelium
morphogenesis.
Proc. Natl. Acad. Sci. U.S.A. 90: 7332-7335 (1993).
MEDLINE.
-
Sternfeld, J.
- Evidence for differential cellular adhesion as the mechanism of
sorting-out of various cellular slime mold species.
J. Embryol. Exp. Morph. 53: 163-178 (1979).
MEDLINE.
-
Sternfeld, J.
- A study of PstB cells during Dictyostelium migration and
culmination reveals a unidirectional cell type conversion process.
Roux's Arch. Dev. Biol. 201: 354-363 (1992).
-
Sternfeld, J.
- The anterior-like cells in Dictyostelium are required for the
elevation of the spores during culmination.
Dev. Genes Evol. 208: 487-494 (1998).
MEDLINE.
-
Sternfeld, J. & David, C. N.
- Cell sorting during pattern formation in Dictyostelium.
Differentiation 20: 10-21 (1981).
-
Takeuchi, I., Kakutani, T. & Tasaka, M.
- Cell behavior during formation of prestalk/prespore pattern in
submerged agglomerates of Dictyostelium discoideum.
Dev. Genet. 9: 607-614 (1988).
MEDLINE.
-
Tang, Y. & Othmer, H. G.
- A G protein-based model of adaptation in Dictyostelium discoideum.
Math. Biosci. 120: 25-76 (1994).
MEDLINE.
-
Tasaka, M. & Takeuchi, I.
- Role of cell sorting in pattern formation in Dictyostelium
discoideum.
Differentiation 18: 191-196 (1981).
MEDLINE.
-
Thomason, P., Traynor, D. & Kay, R.
- Taking the plunge. Terminal differentiation in Dictyostelium.
Trends Genet. 15: 15-19 (1999).
MEDLINE.
-
Tsyganov, I. M., Tsyganov, M. A., Medvinsky, A. B. & Ivanitsky, G. R.
- Processes of selforganization in highly excitable media: open catalog
of new structures.
Dokl. Akad. Nauk 346: 825-832 (1996).
-
Turing, A. M.
- The chemical basis of morphogenesis.
Phil. Trans. Roy. Soc. Lond. B 237: 37-72 (1952).
-
Tyson, J. J., Alexander, K. A., Manoranjan, V. S. & Murray, J. D.
- Spiral waves of cyclic AMP in a model of slime mold aggregation.
Physica D 34: 193-207 (1989).
-
Tyson, J. J. & Murray, J. D.
- Cyclic AMP waves during aggregation of Dictyostelium
amoebae.
Development 106: 421-426 (1989).
MEDLINE.
-
Umeda, T.
- A mathematical model for cell sorting, migration and shape in the
slug stage of Dictyostelium discoideum.
Bull. Math. Biol. 51: 485-500 (1989).
-
Vaessen, E. P. B.
- Calcium waves: a(nother) way of looking at calcium waves.
Master's thesis, University of Utrecht (1999).
-
Vasiev, B. N., Hogeweg, P. & Panfilov, A. V.
- Simulation of Dictyostelium discoideum aggregation via
reaction-diffusion model.
Phys. Rev. Lett. 73: 3173-3176 (1994).
MEDLINE.
-
Verkerke-van Wijk, I & Schaap, P.
- cAMP, a signal for survival.
In Dictyostelium: a model system for cell and
developmental biology, edited by Y. Maeda, K. Inouye & I. Takeuchi, pp.
145-162. Universal Academy Press, Tokyo (1997).
-
Wang, B. & Kuspa, A.
- Dictyostelium development in the absence of cAMP.
Science 277: 251-254 (1997).
MEDLINE.
-
Watts, D. J. & Treffry, T. E.
- Culmination in the slime mould Dictyostelium discoideum
studied with a scanning electron microscope.
J. Embryol. Exp. Morphol. 35: 323-333 (1976).
MEDLINE.
-
Weijer, C. J., McDonald, S. A. & Durston, A. J.
- A frequency difference in optical-density oscillations of early Dictyostelium discoideum density classes and its implications for
development.
Differentiation 28: 9-12 (1984).
-
Whitaker, B. D. & Poff, K. L.
- Thermal adaptation of thermosensing and negative thermotaxis in Dictyostelium.
Exp. Cell Res. 128: 87-93 (1980).
MEDLINE.
-
Wilkins, M. R. & Williams, K. L.
- The extracellular matrix of the Dictyostelium discoideum slug.
Experientia 51: 1189-1196 (1995).
MEDLINE.
-
Williams, G. B., Elder, E. M. & Sussman, M.
- Modulation of the cAMP relay in Dictyostelium discoideum by ammonia and other metabolites: possible morphogenetic
consequences.
Dev. Biol. 105: 377-388 (1984).
MEDLINE.
-
Williams, J.
- Prestalk and stalk cell heterogeneity in Dictyostelium.
In Dictyostelium: a model system for cell and
developmental biology, edited by Y. Maeda, K. Inouye & I. Takeuchi, pp.
293-304. Universal Academy Press, Tokyo (1997).
-
Williams, J., Hopper, N., Early, A., Traynor, D., Harwood, A., Abe, T.,
Simon, M. N. & Véron, M.
- Interacting signalling pathways regulating prestalk cell
differentiation and movement during the morphogenesis of Dictyostelium.
Development Suppl: 1-7 (1993).
MEDLINE.
-
Williams, J. G.
- The role of diffusible molecules in regulating the cellular
differentiation of Dictyostelium discoideum.
Development 103: 1-16 (1988).
-
Williams, J. G., Jermyn, K. A. & Duffy, K. T.
- Formation and anatomy of the prestalk zone of Dictyostelium.
Development Suppl: 91-97 (1989).
MEDLINE.
-
Williams, K. L., Vardy, P. H. & Segel, L. A.
- Cell migrations during morphogenesis: some clues from the slug of
Dictyostelium discoideum.
Bioessays 5: 148-152 (1986).
MEDLINE.
-
Winfree, A. T.
- Spiral waves of chemical activity.
Science 175: 634-636 (1972).
-
Winfree, A. T.
- Electrical instability in cardiac muscle: phase singularities and
rotors.
J. theor. Biol. 138: 353-405 (1989).
MEDLINE.
-
Winfree, A. T.
- Electrical turbulence in three-dimensional heart muscle.
Science 266: 1003-1006 (1994).
MEDLINE.
-
Winfree, A. T. & Strogatz, S. H.
- Organizing centres for three-dimensional chemical waves.
Nature 311: 611-615 (1984).
MEDLINE.
-
Wolpert, L.
- Positional information and the spatial pattern of cellular
differentiation.
J. theor. Biol. 25: 1-47 (1969).
MEDLINE.
-
Yumura, S., Kurata, K. & Kitanishi-Yumura, T.
- Concerted movement of prestalk cells in migrating slugs of Dictyostelium revealed by the localization of myosin.
Dev. Growth Differ. 34: 319-328 (1992).
-
Zeeman, E. C.
- Slime mold culmination.
In Catastrophe theory: selected papers, pp. 216-233.
Addison-Wesley, Reading, Massachusetts (1977).
Next: Samenvatting
Up: From Pattern Formation to Morphogenesis
Previous: 7. Summarising Discussion
  Contents